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Bioinformatics for DNA sequence analysis

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Bibliographic Details
Group Author: Posada David.
Published: Humana Press,
Publisher Address: New York
Publication Dates: c2009.
Literature type: Book
Language: English
Series: Methods in molecular biology ; 537
Subjects:
Nucleotide sequence.
Sequence Analysis, DNA > methods.
Computational Biology > methods.
Bioinformatics
Carrier Form: xiii, 354 p.: ill. ; 27 cm.
ISBN: 9781588299109 (hbk. : alk. paper)
1588299104 (hbk. : alk. paper)
9781597452519 (e-ISBN)
1597452513 (e-ISBN)
Index Number: Q811
CLC: Q811.4
Q524.01
Q523.01
Call Number: Q523.01/B615
Contents: Includes bibliographical references and index.
Similarity searching using BLAST / Kit J. Menlove, Mark Clement, and Keith A. Crandall -- Gene orthology assessment with OrthologID / Mary Egan ... [et al.] -- Multiple alignment of DNA sequences with MAFFT / Kazutaka Katoh, George Asimenos, and Hiroyuki Toh -- SeqVis : a tool for detecting compositional heterogeneity among aligned nucleotide sequences / Lars Sommer Jermiin ... [et al.] -- Selection of models of DNA evolution with jModelTest / David Posada -- Estimating maximum likelihood phylogenies with PhyML / Stéphane Guindon ... [et al.] -- Trees from trees : construction of phylogenetic supertrees using clann / Christopher J. Creevey and James O. McInerney -- Detecting signatures of selection from DNA sequences using datamonkey / Art F.Y. Poon, Simon D.W. Frost, and Sergei L. Kosakovsky Pond -- Recombination detection and analysis using RDP3 / Darren P. Martin -- CodonExplorer : an interactive online database for the analysis of codon usage and sequence composition / Jesse Zaneveld ... [et al.] -- Genetic code prediction for metazoan mitochondria with GenDecoder / Federico Abascal, Rafael Zardoya, and David Posada -- Computational gene annotation in new genome assemblies using GeneID / Enrique Blanco and Josep F. Abril -- Promoter analysis : gene regulatory motif identification with A-GLAM / Leonardo Mariño-Ramírez ... [et al.] -- Analysis of genomic DNA with the UCSC Genome Browser / Jonathan Pevsner -- Mining for SNPs and SSRs using SNPServer, dbSNP and SSR taxonomy tree / Jacqueline Batley and David Edwards -- Analysis of transposable element sequences using CENSOR and RepeatMasker / Ahsan Huda and I. King Jordan -- DNA sequence polymorphism analysis using DnaSP / Julio Rozas.

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